W7XIN2_TETTS protein (Tetrahymena thermophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W7XIN2_TETTS

DNA repair helicase rad25. (168 aa)

Predicted Functional Partners:

Q22KF2_TETTS

0.942

I7MGZ2_TETTS

0.932

I7M9F6_TETTS

0.931

Q231M7_TETTS

0.927

Q24FV0_TETTS

0.909

I7M6R9_TETTS

0.884

A4VDR4_TETTS

0.873

W7WXG3_TETTS

0.868

W7XDW4_TETTS

0.863

I7LWZ3_TETTS

0.860

Your Current Organism:

Tetrahymena thermophila

NCBI taxonomy Id: 312017
Other names: T. thermophila SB210, Tetrahymena thermophila SB210

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A4VDR4_TETTS	I7LWZ3_TETTS	A4VDR4	I7LWZ3	Conjugation stage-specific protein.	RNA polymerase Rpb7, amine-terminal domain protein.	0.999
A4VDR4_TETTS	I7M6R9_TETTS	A4VDR4	I7M6R9	Conjugation stage-specific protein.	DNA-directed RNA polymerase subunit K.	0.999
A4VDR4_TETTS	I7M9F6_TETTS	A4VDR4	I7M9F6	Conjugation stage-specific protein.	General transcription factor IIH subunit.	0.995
A4VDR4_TETTS	I7MGZ2_TETTS	A4VDR4	I7MGZ2	Conjugation stage-specific protein.	Transcription factor tfb4.	0.995
A4VDR4_TETTS	Q22KF2_TETTS	A4VDR4	Q22KF2	Conjugation stage-specific protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.994
A4VDR4_TETTS	Q231M7_TETTS	A4VDR4	Q231M7	Conjugation stage-specific protein.	General transcription factor IIB.	0.999
A4VDR4_TETTS	Q24FV0_TETTS	A4VDR4	Q24FV0	Conjugation stage-specific protein.	RNA polymerase Rpb5, carboxy-terminal domain protein.	0.999
A4VDR4_TETTS	W7WXG3_TETTS	A4VDR4	W7WXG3	Conjugation stage-specific protein.	DNA-directed RNA polymerase II 13.3 kDa proteinRPB11.	0.999
A4VDR4_TETTS	W7XDW4_TETTS	A4VDR4	W7XDW4	Conjugation stage-specific protein.	F-box protein, putative.	0.999
A4VDR4_TETTS	W7XIN2_TETTS	A4VDR4	W7XIN2	Conjugation stage-specific protein.	DNA repair helicase rad25.	0.873
I7LWZ3_TETTS	A4VDR4_TETTS	I7LWZ3	A4VDR4	RNA polymerase Rpb7, amine-terminal domain protein.	Conjugation stage-specific protein.	0.999
I7LWZ3_TETTS	I7M6R9_TETTS	I7LWZ3	I7M6R9	RNA polymerase Rpb7, amine-terminal domain protein.	DNA-directed RNA polymerase subunit K.	0.999
I7LWZ3_TETTS	I7M9F6_TETTS	I7LWZ3	I7M9F6	RNA polymerase Rpb7, amine-terminal domain protein.	General transcription factor IIH subunit.	0.994
I7LWZ3_TETTS	I7MGZ2_TETTS	I7LWZ3	I7MGZ2	RNA polymerase Rpb7, amine-terminal domain protein.	Transcription factor tfb4.	0.995
I7LWZ3_TETTS	Q22KF2_TETTS	I7LWZ3	Q22KF2	RNA polymerase Rpb7, amine-terminal domain protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.995
I7LWZ3_TETTS	Q231M7_TETTS	I7LWZ3	Q231M7	RNA polymerase Rpb7, amine-terminal domain protein.	General transcription factor IIB.	0.999
I7LWZ3_TETTS	Q24FV0_TETTS	I7LWZ3	Q24FV0	RNA polymerase Rpb7, amine-terminal domain protein.	RNA polymerase Rpb5, carboxy-terminal domain protein.	0.999
I7LWZ3_TETTS	W7WXG3_TETTS	I7LWZ3	W7WXG3	RNA polymerase Rpb7, amine-terminal domain protein.	DNA-directed RNA polymerase II 13.3 kDa proteinRPB11.	0.999
I7LWZ3_TETTS	W7XDW4_TETTS	I7LWZ3	W7XDW4	RNA polymerase Rpb7, amine-terminal domain protein.	F-box protein, putative.	0.999
I7LWZ3_TETTS	W7XIN2_TETTS	I7LWZ3	W7XIN2	RNA polymerase Rpb7, amine-terminal domain protein.	DNA repair helicase rad25.	0.860