STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR24254.1Putative transcriptional regulator, gntR family protein; COG1802 Transcriptional regulators. (222 aa)    
Predicted Functional Partners:
EAR24601.1
Putative gntR-family regulatory protein; COG1802 Transcriptional regulators.
  
     0.774
EAR23977.1
Regulatory protein GntR, HTH; COG2186 Transcriptional regulators.
  
    0.765
EAR25855.1
COG2186 Transcriptional regulators.
  
    0.755
EAR23693.1
COG2186 Transcriptional regulators.
  
    0.740
EAR24470.1
COG2186 Transcriptional regulators.
  
    0.722
EAR24486.1
COG2186 Transcriptional regulators.
  
    0.703
EAR24251.1
ATP-binding protein; COG1126 ABC-type polar amino acid transport system, ATPase component.
       0.445
EAR24252.1
COG0765 ABC-type amino acid transport system, permease component.
       0.442
EAR24253.1
Secreted protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
       0.442
prmC
Methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
    
   0.435
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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