STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR25045.1Hypothetical protein; COG3594 Fucose 4-O-acetylase and related acetyltransferases. (364 aa)    
Predicted Functional Partners:
EAR24234.1
Putative integral membrane protein; COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC.
 
     0.709
EAR24811.1
Exopolysaccharide production protein; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
    0.695
EAR23652.1
Hypothetical protein.
  
     0.568
EAR25046.1
Oxidoreductase; COG4221 Short-chain alcohol dehydrogenase of unknown specificity.
       0.565
EAR25044.1
COG2873 O-acetylhomoserine sulfhydrylase.
       0.526
EAR24810.1
Exopolysaccharide production protein; COG3307 Lipid A core - O-antigen ligase and related enzymes.
 
    0.451
EAR25236.1
Hypothetical protein.
  
     0.442
EAR26056.1
Cell surface polysaccharide biosynthesis / Chain length determinant protein; COG3944 Capsular polysaccharide biosynthesis protein.
 
    0.413
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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