STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR25127.1Probable succinyl-CoA: 3-ketoacid-coenzyme A tramsferase (beta subunit); ScoB (3-oxo-acid: CoA transferase) (OXCT B); COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit. (214 aa)    
Predicted Functional Partners:
EAR25126.1
Putative 3-oxoadipate CoA-transferase subunit A; COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
 0.999
EAR23736.1
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.911
EAR25125.1
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
 
 0.888
EAR25124.1
Putative short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
 
  0.862
EAR23700.1
3-hydroxyacyl-CoA dehydrogenase-like protein; COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.861
EAR25116.1
COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.850
EAR23839.1
Hypothetical protein; COG4689 Acetoacetate decarboxylase.
    
 0.835
EAR25119.1
COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
    
  0.820
EAR25122.1
Putative acid-CoA ligase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 
 0.818
EAR25121.1
COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
       0.780
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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