STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR23643.1Hypothetical protein; COG2755 Lysophospholipase L1 and related esterases. (253 aa)    
Predicted Functional Partners:
EAR24185.1
COG0438 Glycosyltransferase.
 
      0.833
EAR25061.1
Hypothetical protein.
   
  0.648
EAR25291.1
LytC.
   
  0.648
EAR24991.1
Hypothetical protein.
   
  0.648
EAR25771.1
COG2340 Uncharacterized protein with SCP/PR1 domains.
   
  0.648
EAR23642.1
Hypothetical protein.
       0.524
secE
Preprotein translocase SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.510
EAR25071.1
arginyl-tRNA synthetase.
    
  0.477
EAR25104.1
Fibronectin-related protein.
    
  0.477
EAR24876.1
Hypothetical protein; COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase.
    
  0.477
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.