STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR23742.1Membrane protein. (151 aa)    
Predicted Functional Partners:
EAR23739.1
Hypothetical protein; COG0471 Di- and tricarboxylate transporters.
 
     0.709
EAR25184.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.674
EAR23740.1
Hypothetical protein.
       0.643
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
       0.643
EAR24418.1
Probable export or membrane protein.
  
     0.577
EAR25488.1
Membrane protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
     0.554
EAR24445.1
COG1862 Preprotein translocase subunit YajC.
  
     0.513
rpmF
COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
     0.512
EAR24356.1
Hypothetical protein.
  
     0.499
EAR25207.1
Conserved ypothetical protein; COG1388 FOG: LysM repeat.
  
     0.490
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.