STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR25381.1Putative secreted protein; COG3291 FOG: PKD repeat. (941 aa)    
Predicted Functional Partners:
EAR23778.1
COG1331 Highly conserved protein containing a thioredoxin domain.
   
  0.891
EAR25071.1
arginyl-tRNA synthetase.
    
  0.670
EAR25104.1
Fibronectin-related protein.
    
  0.670
EAR24876.1
Hypothetical protein; COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase.
    
  0.670
EAR25952.1
Transcriptional regulator, AraC family with Parallel beta-helix repeat.
    
  0.670
EAR26057.1
COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria).
    
  0.670
EAR24724.1
Von Willebrand factor, type A; COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.
    
  0.670
EAR24688.1
Maltodextrin glucosidase; COG0366 Glycosidases; Belongs to the glycosyl hydrolase 13 family.
  
  
 0.635
EAR24684.1
Alpha amylase, catalytic subdomain; COG0366 Glycosidases.
     
 0.568
EAR25509.1
Hypothetical protein; COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family.
  
  
 0.486
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.