STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR25662.1Regulatory proteins, AsnC/Lrp; COG1522 Transcriptional regulators. (314 aa)    
Predicted Functional Partners:
EAR25275.1
Hypothetical protein.
  
     0.538
EAR23641.1
Probable solute binding protein of ABC transporter system; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
     0.496
EAR25380.1
Hypothetical protein; COG0665 Glycine/D-amino acid oxidases (deaminating).
  
     0.472
EAR25098.1
Hypothetical protein; COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.469
EAR25952.1
Transcriptional regulator, AraC family with Parallel beta-helix repeat.
  
     0.437
EAR26263.1
Putative oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating).
  
     0.436
EAR23863.1
Hypothetical protein; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.
  
     0.420
EAR26086.1
Hypothetical protein.
  
     0.417
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.