STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR23918.1COG4270 Predicted membrane protein. (129 aa)    
Predicted Functional Partners:
EAR24138.1
Malate:quinone oxidoreductase; COG2755 Lysophospholipase L1 and related esterases.
  
     0.674
EAR24137.1
Hypothetical protein; COG2755 Lysophospholipase L1 and related esterases.
  
     0.650
EAR23917.1
COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.533
EAR23919.1
Hypothetical protein.
       0.476
EAR25384.1
Glucosyltransferase; COG0438 Glycosyltransferase.
  
     0.424
EAR24065.1
Hypothetical protein.
  
     0.420
EAR24881.1
Hypothetical protein.
  
     0.400
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.