STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR24787.1Competence protein F; COG1040 Predicted amidophosphoribosyltransferases. (237 aa)    
Predicted Functional Partners:
xerC-2
Tyrosine recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.880
EAR25437.1
COG0658 Predicted membrane metal-binding protein.
 
  
 0.846
EAR25255.1
COG0287 Prephenate dehydrogenase.
   
  
 0.823
EAR24978.1
COG1820 N-acetylglucosamine-6-phosphate deacetylase.
  
    0.766
EAR24236.1
Lipopolysaccharide exporter; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
   
    0.755
EAR26207.1
COG1232 Protoporphyrinogen oxidase.
  
    0.754
EAR25635.1
DNA processing factor; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
 
 
 0.744
hpf
Sigma-54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.707
EAR24789.1
Two-component system, sensor protein; COG0642 Signal transduction histidine kinase.
 
    0.681
EAR24788.1
Lipoprotein.
 
     0.663
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.