STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR24891.1Hypothetical protein. (618 aa)    
Predicted Functional Partners:
EAR24892.1
COG1061 DNA or RNA helicases of superfamily II.
 
     0.906
EAR24888.1
Hypothetical protein; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.849
EAR24890.1
Hypothetical protein.
       0.802
EAR24811.1
Exopolysaccharide production protein; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
  
     0.751
EAR24810.1
Exopolysaccharide production protein; COG3307 Lipid A core - O-antigen ligase and related enzymes.
  
     0.750
EAR26147.1
Membrane protein.
  
     0.738
EAR23821.1
COG0210 Superfamily I DNA and RNA helicases.
 
   
 0.703
rbpA
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
 
 
   0.689
EAR24788.1
Lipoprotein.
  
    0.684
EAR24025.1
Hypothetical protein.
  
     0.663
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.