STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR24960.1Putative ABC-transporter polyamine-binding lipoprotein; COG0687 Spermidine/putrescine-binding periplasmic protein. (404 aa)    
Predicted Functional Partners:
potA
Putative polyamine ABC-transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  0.997
EAR24963.1
Putative polyamine ABC-transporter integral membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
  0.997
EAR26265.1
COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
  0.985
EAR24962.1
Putative polyamine ABC transporter permease protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
  0.984
potB
COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
  0.928
EAR25978.1
Putative ABC transporter permease protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
  0.884
EAR25977.1
Putative ABC transporter permease protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
  0.861
potA-2
Spermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  0.771
EAR25975.1
Putative ABC transporter ATP-binding protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
  0.766
EAR26042.1
Putative ABC-transporter membrane protein; COG0395 ABC-type sugar transport system, permease component.
 
 
  0.728
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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