STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR25787.1Peptide ABC transporter, ATP-binding protein; COG4608 ABC-type oligopeptide transport system, ATPase component. (258 aa)    
Predicted Functional Partners:
EAR25785.1
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.996
EAR23703.1
ABC transporter permease protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
  0.981
EAR23762.1
ABC transporter, permease protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
  0.979
EAR25364.1
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
  0.978
EAR25934.1
ABC transporter permease protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
  0.976
EAR25791.1
Putative ABC transporter, permease; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.973
EAR24562.1
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
  0.965
EAR25497.1
ABC transporter permease; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
  0.963
EAR25394.1
ABC transporter, permease protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
  0.948
EAR25784.1
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.946
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.