STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR26018.1Lycopene e-cyclase isoprenoid transferase B; COG0609 ABC-type Fe3+-siderophore transport system, permease component. (103 aa)    
Predicted Functional Partners:
EAR26019.1
C50 carotenoid epsilon cyclase.
 
  
 0.989
EAR26021.1
COG1562 Phytoene/squalene synthetase.
 
 
 0.978
EAR26020.1
COG1233 Phytoene dehydrogenase and related proteins.
 
 
 0.976
EAR26017.1
Hypothetical protein; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.
 
   
 0.972
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
 
  
 0.818
EAR24021.1
COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.619
atpD
ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
  0.590
EAR25628.1
Hypothetical protein; COG2409 Predicted drug exporters of the RND superfamily.
     
 0.522
EAR26192.1
Oxidoreductase; COG0644 Dehydrogenases (flavoproteins).
 
 
 0.460
EAR25149.1
COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
 
  
 0.431
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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