STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR26254.1Hypothetical protein; COG0662 Mannose-6-phosphate isomerase. (121 aa)    
Predicted Functional Partners:
EAR24368.1
COG0166 Glucose-6-phosphate isomerase.
    
 0.775
EAR26065.1
Hypothetical protein; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 
 0.662
manB
Phosphomannomutase/phosphoglucomutase; COG1109 Phosphomannomutase.
  
 
 0.650
EAR24200.1
COG1109 Phosphomannomutase.
  
 
 0.650
EAR24842.1
COG1004 Predicted UDP-glucose 6-dehydrogenase.
  
 
 0.606
EAR25010.1
COG1396 Predicted transcriptional regulators.
  
 0.606
EAR24862.1
UTP-glucose-1-phosphate uridylyltransferase; COG1210 UDP-glucose pyrophosphorylase.
    
 0.572
EAR26252.1
ABC transporter, integral membrane subunit; COG0765 ABC-type amino acid transport system, permease component.
       0.558
EAR26253.1
ABC transporter, ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
       0.558
EAR23843.1
Hypothetical protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
  
  0.556
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.