STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR23968.1Helix-turn-helix, Fis-type protein; COG2508 Regulator of polyketide synthase expression. (511 aa)    
Predicted Functional Partners:
EAR26262.1
Hypothetical protein; COG3450 Predicted enzyme of the cupin superfamily.
  
     0.666
EAR26086.1
Hypothetical protein.
  
     0.582
EAR25770.1
Transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator.
  
     0.578
EAR23967.1
Hypothetical protein; COG0160 4-aminobutyrate aminotransferase and related aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.547
EAR23782.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.539
EAR23969.1
Membrane protein; COG1316 Transcriptional regulator.
 
    0.517
EAR25973.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.509
EAR25769.1
Putative oxidoreductase; COG1231 Monoamine oxidase.
  
     0.501
EAR25404.1
glycyl-tRNA synthetase.
  
     0.444
EAR24990.1
Hypothetical protein; COG1805 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB.
  
     0.404
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.