STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR24623.1D-amino-acid dehydrogenase; COG0665 Glycine/D-amino acid oxidases (deaminating). (438 aa)    
Predicted Functional Partners:
EAR25857.1
Thiamine biosynthesis oxidoreductase ThiO; COG0665 Glycine/D-amino acid oxidases (deaminating).
  
  
 0.904
EAR24394.1
Glutamate synthase, alpha subunit; COG0067 Glutamate synthase domain 1.
  
 
 0.884
EAR25773.1
Putative oxidase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
  
 0.830
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
  
 0.740
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.665
hisC
COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
  0.601
EAR26133.1
Putative aminotransferase; COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase.
   
 
  0.601
EAR24599.1
Proline racemase, putative; COG3938 Proline racemase; Belongs to the proline racemase family.
 
  
  0.596
EAR25641.1
COG0247 Fe-S oxidoreductase.
     
 0.575
EAR25851.1
Putative oxidoreductase; COG0277 FAD/FMN-containing dehydrogenases.
     
 0.575
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.