STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR24726.1Hypothetical protein; COG2030 Acyl dehydratase. (124 aa)    
Predicted Functional Partners:
EAR24727.1
Hypothetical protein; COG2030 Acyl dehydratase.
 
 0.999
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.816
EAR23736.1
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.729
EAR25901.1
Iron-sulfur oxidoreductase beta subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
 0.715
EAR23694.1
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
 
   0.702
EAR25915.1
COG0753 Catalase; Belongs to the catalase family.
   
  0.585
EAR25355.1
Hypothetical protein; COG2508 Regulator of polyketide synthase expression.
  
     0.539
EAR25356.1
COG0331 (acyl-carrier-protein) S-malonyltransferase.
  
  
 0.512
EAR23695.1
Hypothetical protein; COG0183 Acetyl-CoA acetyltransferase.
  
  0.507
rpoZ
DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
   
 0.436
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.