STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR24203.1COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain. (342 aa)    
Predicted Functional Partners:
EAR24204.1
COG0578 Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
    
  0.616
EAR25004.1
Phosphoenolpyruvate-protein phosphotransferase; COG3412 Uncharacterized protein conserved in bacteria.
 
 
 0.473
EAR24938.1
PTS system, glucitol/sorbitol-specific enzyme II, C2 component; COG3730 Phosphotransferase system sorbitol-specific component IIC.
 
     0.454
EAR24934.1
Oxidoreductase, putative; COG4091 Predicted homoserine dehydrogenase.
 
     0.442
EAR24937.1
PTS system, glucitol/sorbitol-specific enzyme II, BC component; COG3732 Phosphotransferase system sorbitol-specific component IIBC.
 
     0.418
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.