STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR24470.1COG2186 Transcriptional regulators. (238 aa)    
Predicted Functional Partners:
EAR25855.1
COG2186 Transcriptional regulators.
  
     0.733
EAR24254.1
Putative transcriptional regulator, gntR family protein; COG1802 Transcriptional regulators.
  
    0.722
EAR24601.1
Putative gntR-family regulatory protein; COG1802 Transcriptional regulators.
  
    0.694
EAR26298.1
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
    0.680
EAR23771.1
Regulatory protein GntR, HTH:GntR, C-terminal; COG1802 Transcriptional regulators.
  
    0.665
EAR26000.1
COG1802 Transcriptional regulators.
  
    0.638
EAR24486.1
COG2186 Transcriptional regulators.
  
     0.629
EAR23693.1
COG2186 Transcriptional regulators.
  
     0.619
EAR25901.1
Iron-sulfur oxidoreductase beta subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
    
  0.595
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
       0.470
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.