STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_0091GGDEF domain protein. (821 aa)    
Predicted Functional Partners:
ydeH
Two component response regulator, GGDEF domain protein.
 
 0.988
rscS
Hybrid sensor kinase RscS; Activator of syp locus genes.
 
 0.957
arcB
Hybrid sensory histidine kinase in two-component regulatory system with ArcA.
 
 
 0.928
csrD
Conserved inner membrane protein.
 
  
 0.919
torS
Hybrid sensory histidine kinase in two-component regulatory system with TorR.
 
 0.911
yeaP
GGDEF domain protein.
 
 0.906
mifA
Diguanylate cyclase (GGDEF), inhibitor of flagellar motility.
 
 
 0.899
VF_2261
GGDEF domain protein.
 
 
 0.899
VF_A0056
GGDEF domain protein.
  
 0.887
gacS
Hybrid sensory histidine kinase, in two-component regulatory system with GacA.
 
 0.884
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.