STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_0189Membrane protein, putative. (425 aa)    
Predicted Functional Partners:
fnlB
UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase.
  
  
 0.881
VF_0188
Glycosyltransferase.
  
  
 0.790
VF_0190
Hypothetical protein.
       0.773
rffE
UDP-N-acetyl glucosamine-2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.751
VF_0196
Undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase.
  
  
 0.731
rffG
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.724
rffH
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.722
wbjE
Similar to Glycosyl transferases group 1 (ORF_11).
  
  
 0.709
fnlA
UDP-N-acetylglucosamine 4,6-dehydratase.
  
  
 0.708
VF_0197
UDP-D-quinovosamine 4-dehydrogenase.
  
  
 0.687
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.