STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytfJPredicted transcriptional regulator. (183 aa)    
Predicted Functional Partners:
VF_0330
Hypothetical protein.
 
     0.920
VF_2099
Hypothetical protein.
 
     0.757
uspB
Universal stress (ethanol tolerance) protein B.
  
     0.738
VF_0315
Opacity associated protein OapA.
  
     0.721
VF_1050
Protein YciN.
  
     0.720
yijD
Conserved inner membrane protein.
  
     0.720
yicH
Conserved protein.
  
     0.684
VF_1801
Hypothetical protein.
  
     0.672
nlpB
Lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.598
pnuC
Predicted nicotinamide mononucleotide transporter.
  
     0.567
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.