Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VF_0343 | VF_0344 | VF_0343 | VF_0344 | Hypothetical protein. | Glycosyltransferase. | 0.802 |
VF_0343 | VF_0345 | VF_0343 | VF_0345 | Hypothetical protein. | Lipopolysaccharide N-acetylglucosaminyltransferase. | 0.784 |
VF_0343 | VF_0347 | VF_0343 | VF_0347 | Hypothetical protein. | Membrane protein, putative. | 0.802 |
VF_0343 | VF_0348 | VF_0343 | VF_0348 | Hypothetical protein. | Sensor protein UhpB. | 0.802 |
VF_0343 | VF_0349 | VF_0343 | VF_0349 | Hypothetical protein. | Chain length regulator, exopolysaccharide biosynthesis protein. | 0.811 |
VF_0343 | VF_0350 | VF_0343 | VF_0350 | Hypothetical protein. | Periplasmic protein involved in polysaccharide export. | 0.802 |
VF_0343 | VF_0351 | VF_0343 | VF_0351 | Hypothetical protein. | Transcriptional regulator, TetR family. | 0.802 |
VF_0343 | wcaJ | VF_0343 | VF_0352 | Hypothetical protein. | Predicted UDP-glucose lipid carrier transferase. | 0.785 |
VF_0344 | VF_0343 | VF_0344 | VF_0343 | Glycosyltransferase. | Hypothetical protein. | 0.802 |
VF_0344 | VF_0345 | VF_0344 | VF_0345 | Glycosyltransferase. | Lipopolysaccharide N-acetylglucosaminyltransferase. | 0.848 |
VF_0344 | VF_0347 | VF_0344 | VF_0347 | Glycosyltransferase. | Membrane protein, putative. | 0.802 |
VF_0344 | VF_0348 | VF_0344 | VF_0348 | Glycosyltransferase. | Sensor protein UhpB. | 0.802 |
VF_0344 | VF_0349 | VF_0344 | VF_0349 | Glycosyltransferase. | Chain length regulator, exopolysaccharide biosynthesis protein. | 0.920 |
VF_0344 | VF_0350 | VF_0344 | VF_0350 | Glycosyltransferase. | Periplasmic protein involved in polysaccharide export. | 0.868 |
VF_0344 | VF_0351 | VF_0344 | VF_0351 | Glycosyltransferase. | Transcriptional regulator, TetR family. | 0.918 |
VF_0344 | wcaJ | VF_0344 | VF_0352 | Glycosyltransferase. | Predicted UDP-glucose lipid carrier transferase. | 0.968 |
VF_0345 | VF_0343 | VF_0345 | VF_0343 | Lipopolysaccharide N-acetylglucosaminyltransferase. | Hypothetical protein. | 0.784 |
VF_0345 | VF_0344 | VF_0345 | VF_0344 | Lipopolysaccharide N-acetylglucosaminyltransferase. | Glycosyltransferase. | 0.848 |
VF_0345 | VF_0347 | VF_0345 | VF_0347 | Lipopolysaccharide N-acetylglucosaminyltransferase. | Membrane protein, putative. | 0.784 |
VF_0345 | VF_0348 | VF_0345 | VF_0348 | Lipopolysaccharide N-acetylglucosaminyltransferase. | Sensor protein UhpB. | 0.784 |
page 1 of 5