STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mshIMSHA biogenesis protein MshI. (487 aa)    
Predicted Functional Partners:
mshN
MSHA biogenesis protein MshN.
 
   
 0.985
mshL
MSHA biogenesis protein MshL.
 
   
 0.979
mshJ
MSHA biogenesis protein MshJ.
 
   
 0.950
mshQ
MshQ protein.
 
   
 0.939
mshA
MSHA pilin protein MshA.
 
  
 0.901
pilM
Pili assembly protein PilM.
  
 
 0.892
pilO
Pili assembly protein PilO.
 
 
 0.884
pilP
Pili assembly protein PilP.
 
 
 0.883
mshE
MSHA biogenesis protein MshE.
  
 
 0.857
mshG
MSHA biogenesis protein MshG.
 
 
 
 0.855
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.