STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mshAMSHA pilin protein MshA. (154 aa)    
Predicted Functional Partners:
mshL
MSHA biogenesis protein MshL.
 
  
 0.937
mshD
MshD protein.
 
   
 0.934
mshI
MSHA biogenesis protein MshI.
 
  
 0.930
mshN
MSHA biogenesis protein MshN.
 
   
 0.922
mshJ
MSHA biogenesis protein MshJ.
 
   
 0.914
mshQ
MshQ protein.
 
   
 0.898
mshO
MSHA pilus assembly protein MshO.
 
   
 0.891
mshG
MSHA biogenesis protein MshG.
 
    0.867
mshM
MSHA biogenesis protein MshM.
 
     0.853
mshQ2
MshQ protein.
 
     0.837
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.