Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yrbCPredicted ABC-type organic solvent transporter. (213 aa)    
Predicted Functional Partners:
yrbD
Predicted ABC-type organic solvent transporter.
 
 0.999
yrbB
Predicted NTP-binding protein.
 
 
 0.995
yrbF
Predicted toluene transporter subunit: ATP-binding component of ABC superfamily.
 
 
 0.991
yrbE
Predicted toluene transporter subunit: membrane component of ABC superfamily.
 
 
 0.988
vacJ
VacJ lipoprotein.
 
 
 
 0.917
yrbA
Predicted DNA-binding transcriptional regulator; Belongs to the BolA/IbaG family.
       0.852
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.841
lptC
Probable exported protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
 
    0.837
plsC
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
 
     0.744
yrbG
Predicted calcium/sodium:proton antiporter.
       0.708
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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