STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_0416Proline-rich antigen. (158 aa)    
Predicted Functional Partners:
hslR
Ribosome-associated heat shock protein Hsp15; Belongs to the HSP15 family.
  
    0.619
VF_0426
Conserved secreted protein.
  
     0.615
VF_2217
Cytochrome c1.
  
     0.606
VF_A0422
Hypothetical protein.
  
     0.551
VF_0813
Hypothetical protein.
  
     0.523
VF_1491
ATPase involved in DNA repair.
  
   
 0.522
VF_1825
Hypothetical protein.
  
     0.522
cycA
Cytochrome c4.
  
     0.518
VF_1489
Hypothetical protein.
  
     0.507
VF_2112
Hypothetical protein.
  
     0.494
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.