STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vpsRSigma-54 dependent transcriptional regulator VpsR. (445 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.887
vpsT
DNA-binding transcriptional activator VpsT (CsgD-like).
    
 
 0.780
sypF
Two-component hybrid sensor histidine kinase; Syp polysaccharide locus.
  
 
 0.758
rscS
Hybrid sensor kinase RscS; Activator of syp locus genes.
  
 
 0.714
lysU
Lysine tRNA synthetase, inducible; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.645
prfB
Peptide chain release factor RF-2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
     
 0.640
sypE
Two-component response regulator, sigma factor PP2C-like phosphatase; Syp polysaccharide locus.
  
  
 0.635
flhG
Flagellar synthesis regulator FlhG, conserved domain COG0455.
  
 
 0.603
fliM
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.582
ntrB
Nitrogen regulatory sensory histidine kinase in two-component regulatory system with NtrC.
  
 
 0.542
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.