STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nhaRDNA-binding transcriptional activator; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
hlyU
Transcriptional activator HlyU.
       0.751
hdfR
DNA-binding transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
   
 0.611
cyaA
Adenylate cyclase; Belongs to the adenylyl cyclase class-1 family.
  
   
 0.609
sdhC
Succinate dehydrogenase, membrane subunit, binds cytochrome b556.
      
 0.605
pmbA
Predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17.
      
 0.569
hflB
ATP-dependent zinc-metalloprotease; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
      
 0.569
hcp
Hydroxylamine reductase Hcp; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
      
 0.567
sdaA
L-serine deaminase I; Belongs to the iron-sulfur dependent L-serine dehydratase family.
      
 0.566
yhcM
Conserved protein with nucleoside triphosphate hydrolase domain; Reduces the stability of FtsZ polymers in the presence of ATP.
      
 0.560
dusB
tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.
      
 0.549
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.