STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hlyUTranscriptional activator HlyU. (98 aa)    
Predicted Functional Partners:
rtxA1
RTX (repeats in toxin) calcium-binding cytotoxin RtxA1.
      
 0.692
nhaR
DNA-binding transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
    0.638
intA
Phage family integrase; Belongs to the 'phage' integrase family.
      
 0.497
cfa
Cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase).
      
 0.497
VF_A0841
3-hydroxy-3-methylglutaryl-coenzyme A reductase.
      
 0.497
rpoS
RNA polymerase, sigma-S (sigma-38) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
      
 0.459
VF_A0790
Chloramphenicol acetyltransferase.
      
 0.451
rtxB
ATP-binding protein, putative RTX transport secretion component RtxB.
      
 0.451
modA
Molybdate ABC transporter, periplasmic molybdate-binding protein.
     
 0.443
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.