Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VF_0508 | VF_0662 | VF_0508 | VF_0662 | SMP protein precursor. | Hypothetical protein; Belongs to the UPF0253 family. | 0.702 |
VF_0508 | VF_0722 | VF_0508 | VF_0722 | SMP protein precursor. | Putative lipoprotein. | 0.670 |
VF_0508 | VF_1795 | VF_0508 | VF_1795 | SMP protein precursor. | Outer membrane protein C. | 0.756 |
VF_0508 | VF_1900 | VF_0508 | VF_1900 | SMP protein precursor. | COME operon protein 3. | 0.685 |
VF_0508 | VF_2497 | VF_0508 | VF_2497 | SMP protein precursor. | Hypothetical protein. | 0.688 |
VF_0508 | VF_A0037 | VF_0508 | VF_A0037 | SMP protein precursor. | Hypothetical protein. | 0.677 |
VF_0508 | VF_A1171 | VF_0508 | VF_A1171 | SMP protein precursor. | ParB family protein; Belongs to the ParB family. | 0.707 |
VF_0508 | sypJ | VF_0508 | VF_A1029 | SMP protein precursor. | Glycosyl transferases group 1; Syp polysaccharide locus. | 0.695 |
VF_0508 | yggD | VF_0508 | VF_A0063 | SMP protein precursor. | Predicted DNA-binding transcriptional regulator. | 0.770 |
VF_0508 | yijD | VF_0508 | VF_2437 | SMP protein precursor. | Conserved inner membrane protein. | 0.684 |
VF_0662 | VF_0508 | VF_0662 | VF_0508 | Hypothetical protein; Belongs to the UPF0253 family. | SMP protein precursor. | 0.702 |
VF_0662 | VF_0722 | VF_0662 | VF_0722 | Hypothetical protein; Belongs to the UPF0253 family. | Putative lipoprotein. | 0.631 |
VF_0662 | VF_1795 | VF_0662 | VF_1795 | Hypothetical protein; Belongs to the UPF0253 family. | Outer membrane protein C. | 0.613 |
VF_0662 | VF_1900 | VF_0662 | VF_1900 | Hypothetical protein; Belongs to the UPF0253 family. | COME operon protein 3. | 0.607 |
VF_0662 | yggD | VF_0662 | VF_A0063 | Hypothetical protein; Belongs to the UPF0253 family. | Predicted DNA-binding transcriptional regulator. | 0.755 |
VF_0662 | yijD | VF_0662 | VF_2437 | Hypothetical protein; Belongs to the UPF0253 family. | Conserved inner membrane protein. | 0.761 |
VF_0722 | VF_0508 | VF_0722 | VF_0508 | Putative lipoprotein. | SMP protein precursor. | 0.670 |
VF_0722 | VF_0662 | VF_0722 | VF_0662 | Putative lipoprotein. | Hypothetical protein; Belongs to the UPF0253 family. | 0.631 |
VF_0722 | VF_1795 | VF_0722 | VF_1795 | Putative lipoprotein. | Outer membrane protein C. | 0.753 |
VF_0722 | VF_1900 | VF_0722 | VF_1900 | Putative lipoprotein. | COME operon protein 3. | 0.645 |
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