STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_0643Serine transporter. (434 aa)    
Predicted Functional Partners:
ycdZ
Predicted inner membrane protein.
  
     0.646
VF_A1041
Protein YgiW precursor.
  
     0.610
yhaM
Conserved protein; Belongs to the UPF0597 family.
 
  
 0.604
cpxP
Periplasmic protein CpxP, modulator of CpxAR signaling.
  
     0.590
yqfB
Conserved protein; Belongs to the UPF0267 family.
  
     0.549
acfD
Accessory colonization factor AcfD-like protein, predicted inner membrane lipoprotein.
  
     0.513
dcuC
Anaerobic C4-dicarboxylate transport.
  
     0.513
VF_1061
Anaerobic C4-dicarboxylate transporter.
  
     0.482
VF_2457
Hypothetical protein.
  
     0.462
yfbU
Conserved protein; Belongs to the UPF0304 family.
  
     0.442
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.