STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yejEPredicted oligopeptide transporter subunit. (350 aa)    
Predicted Functional Partners:
yejB
Predicted oligopeptide transporter subunit.
  
 0.979
VF_0690
Oligopeptide-binding protein OppA.
 
     0.892
VF_0691
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
   
 0.852
VF_0692
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
   
 0.808
VF_0680
Oligopeptide transport system permease protein OppB.
 
   
 0.802
VF_2140
Chitooligosaccharide transport system permease protein.
   
 0.767
sapB
Peptide transport system permease protein SapB.
 
     0.748
oppB
Oligopeptide transport system permease protein OppB.
   
 0.744
dppB
Dipeptide transport system permease protein DppB.
   
 0.703
VF_A0200
Chitooligosaccharide transport ATP-binding protein oppF; Belongs to the ABC transporter superfamily.
   
 0.697
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.