STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_0722Putative lipoprotein. (189 aa)    
Predicted Functional Partners:
VF_0721
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
    0.853
rlmG
Predicted methyltransferase small domain; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA.
       0.838
ampG
Muropeptide transporter AmpG.
 
     0.768
VF_1795
Outer membrane protein C.
  
     0.753
VF_0597
Hypothetical protein.
  
     0.748
ycfP
Conserved protein; Belongs to the UPF0227 family.
  
     0.747
VF_0635
Conserved hypothetical protein.
  
     0.746
lapA
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.724
VF_1649
Hypothetical protein; Belongs to the UPF0352 family.
  
    0.723
ompU
Outer membrane protein U porin OmpU.
  
     0.722
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.