Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VF_0721 | VF_0722 | VF_0721 | VF_0722 | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Putative lipoprotein. | 0.803 |
VF_0721 | ampG | VF_0721 | VF_0720 | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Muropeptide transporter AmpG. | 0.609 |
VF_0721 | bolA | VF_0721 | VF_0724 | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Regulator of penicillin binding proteins and beta lactamase transcription (morphogene); Belongs to the BolA/IbaG family. | 0.590 |
VF_0721 | rlmG | VF_0721 | VF_0723 | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Predicted methyltransferase small domain; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | 0.779 |
VF_0722 | VF_0721 | VF_0722 | VF_0721 | Putative lipoprotein. | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.803 |
VF_0722 | ampG | VF_0722 | VF_0720 | Putative lipoprotein. | Muropeptide transporter AmpG. | 0.659 |
VF_0722 | bolA | VF_0722 | VF_0724 | Putative lipoprotein. | Regulator of penicillin binding proteins and beta lactamase transcription (morphogene); Belongs to the BolA/IbaG family. | 0.590 |
VF_0722 | rlmG | VF_0722 | VF_0723 | Putative lipoprotein. | Predicted methyltransferase small domain; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | 0.779 |
VF_1496 | bolA | VF_1496 | VF_0724 | Glutaredoxin. | Regulator of penicillin binding proteins and beta lactamase transcription (morphogene); Belongs to the BolA/IbaG family. | 0.473 |
VF_1496 | gntY | VF_1496 | VF_2461 | Glutaredoxin. | Predicted gluconate transport associated protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.539 |
VF_1496 | grxD | VF_1496 | VF_0922 | Glutaredoxin. | Glutaredoxin 4; Belongs to the glutaredoxin family. Monothiol subfamily. | 0.462 |
ampG | VF_0721 | VF_0720 | VF_0721 | Muropeptide transporter AmpG. | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.609 |
ampG | VF_0722 | VF_0720 | VF_0722 | Muropeptide transporter AmpG. | Putative lipoprotein. | 0.659 |
ampG | bolA | VF_0720 | VF_0724 | Muropeptide transporter AmpG. | Regulator of penicillin binding proteins and beta lactamase transcription (morphogene); Belongs to the BolA/IbaG family. | 0.476 |
ampG | rlmG | VF_0720 | VF_0723 | Muropeptide transporter AmpG. | Predicted methyltransferase small domain; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | 0.599 |
bolA | VF_0721 | VF_0724 | VF_0721 | Regulator of penicillin binding proteins and beta lactamase transcription (morphogene); Belongs to the BolA/IbaG family. | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.590 |
bolA | VF_0722 | VF_0724 | VF_0722 | Regulator of penicillin binding proteins and beta lactamase transcription (morphogene); Belongs to the BolA/IbaG family. | Putative lipoprotein. | 0.590 |
bolA | VF_1496 | VF_0724 | VF_1496 | Regulator of penicillin binding proteins and beta lactamase transcription (morphogene); Belongs to the BolA/IbaG family. | Glutaredoxin. | 0.473 |
bolA | ampG | VF_0724 | VF_0720 | Regulator of penicillin binding proteins and beta lactamase transcription (morphogene); Belongs to the BolA/IbaG family. | Muropeptide transporter AmpG. | 0.476 |
bolA | gntY | VF_0724 | VF_2461 | Regulator of penicillin binding proteins and beta lactamase transcription (morphogene); Belongs to the BolA/IbaG family. | Predicted gluconate transport associated protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.579 |
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