STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_0885ABC transporter permease protein. (817 aa)    
Predicted Functional Partners:
VF_0886
Hypothetical secreted protein.
  
 0.978
VF_0884
ABC transporter ATP-binding protein.
 
 
 0.962
VF_0327
ABC transporter ATP-binding protein.
  
 
 0.792
VF_1107
ABC transporter ATP-binding protein.
  
 
 0.792
macB
Fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component.
  
 
 0.792
lolD
Outer membrane-specific lipoprotein transporter subunit; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.792
VF_A0737
ABC transporter ATP-binding protein.
  
 
 0.792
VF_A0735
Hypothetical protein.
 
 
 
 0.531
VF_1163
Export ABC transporter permease protein.
  
  
 0.519
VF_1164
Export ABC transporter permease protein.
  
  
 0.519
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.