Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| VF_0327 | lolA | VF_0327 | VF_0906 | ABC transporter ATP-binding protein. | Lipoprotein chaperone; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.760 |
| VF_0327 | lolC | VF_0327 | VF_A0462 | ABC transporter ATP-binding protein. | Outer membrane-specific lipoprotein transporter subunit. | 0.630 |
| VF_0327 | lolE | VF_0327 | VF_A0464 | ABC transporter ATP-binding protein. | Outer membrane-specific lipoprotein transporter subunit. | 0.630 |
| VF_0841 | VF_0844 | VF_0841 | VF_0844 | Dehydrogenase. | Hypothetical protein. | 0.969 |
| VF_0841 | VF_0860 | VF_0841 | VF_0860 | Dehydrogenase. | 3-oxoacyl-(acyl carrier protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.920 |
| VF_0841 | lolA | VF_0841 | VF_0906 | Dehydrogenase. | Lipoprotein chaperone; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.792 |
| VF_0844 | VF_0841 | VF_0844 | VF_0841 | Hypothetical protein. | Dehydrogenase. | 0.969 |
| VF_0844 | VF_0860 | VF_0844 | VF_0860 | Hypothetical protein. | 3-oxoacyl-(acyl carrier protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.985 |
| VF_0844 | lolA | VF_0844 | VF_0906 | Hypothetical protein. | Lipoprotein chaperone; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.797 |
| VF_0860 | VF_0841 | VF_0860 | VF_0841 | 3-oxoacyl-(acyl carrier protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | Dehydrogenase. | 0.920 |
| VF_0860 | VF_0844 | VF_0860 | VF_0844 | 3-oxoacyl-(acyl carrier protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | Hypothetical protein. | 0.985 |
| VF_0860 | lolA | VF_0860 | VF_0906 | 3-oxoacyl-(acyl carrier protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | Lipoprotein chaperone; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.786 |
| VF_0884 | lolA | VF_0884 | VF_0906 | ABC transporter ATP-binding protein. | Lipoprotein chaperone; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.760 |
| VF_0884 | lolC | VF_0884 | VF_A0462 | ABC transporter ATP-binding protein. | Outer membrane-specific lipoprotein transporter subunit. | 0.630 |
| VF_0884 | lolE | VF_0884 | VF_A0464 | ABC transporter ATP-binding protein. | Outer membrane-specific lipoprotein transporter subunit. | 0.630 |
| ftsK | lolA | VF_0905 | VF_0906 | DNA-binding membrane protein required for chromosome resolution and partitioning. | Lipoprotein chaperone; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.785 |
| ftsK | rarA | VF_0905 | VF_0907 | DNA-binding membrane protein required for chromosome resolution and partitioning. | Recombination protein. | 0.724 |
| lolA | VF_0327 | VF_0906 | VF_0327 | Lipoprotein chaperone; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | ABC transporter ATP-binding protein. | 0.760 |
| lolA | VF_0841 | VF_0906 | VF_0841 | Lipoprotein chaperone; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Dehydrogenase. | 0.792 |
| lolA | VF_0844 | VF_0906 | VF_0844 | Lipoprotein chaperone; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Hypothetical protein. | 0.797 |
page 1 of 3