STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygaWPredicted inner membrane protein; Exports L-alanine; Belongs to the AlaE exporter family. (150 aa)    
Predicted Functional Partners:
cpxP
Periplasmic protein CpxP, modulator of CpxAR signaling.
  
     0.740
VF_2030
Exodeoxyribonuclease VIII.
  
     0.726
malT
Fused conserved protein: DNA-binding transcriptional activator/maltotriose-ATP-binding protein; Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto- oligosaccharides. Specifically binds to the promoter region of its target genes, recognizing a short DNA motif called the MalT box.
  
     0.717
yggD
Predicted DNA-binding transcriptional regulator.
  
     0.711
uspB
Universal stress (ethanol tolerance) protein B.
  
     0.674
VF_0315
Opacity associated protein OapA.
  
     0.673
VF_A0073
Di-/tripeptide transporter.
  
     0.667
tehB
Tellurite resistance protein B.
  
     0.662
VF_0966
Hypothetical protein; Belongs to the UPF0149 family.
       0.649
acfD
Accessory colonization factor AcfD-like protein, predicted inner membrane lipoprotein.
  
     0.643
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.