STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_1006Hypothetical protein. (68 aa)    
Predicted Functional Partners:
VF_1007
Primosomal replication protein N'.
     
 0.873
yfcA
Conserved inner membrane protein.
       0.849
dinG
ATP-dependent DNA helicase; DNA-dependent ATPase and 5'-3' DNA helicase.
       0.596
xthA
Exonuclease III.
       0.462
ycfD
Conserved protein.
       0.462
VF_1005
Hypothetical protein.
       0.434
VF_1003
Hypothetical protein.
       0.419
VF_1004
Hypothetical cytosolic protein.
       0.419
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.