STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_1007Primosomal replication protein N'. (183 aa)    
Predicted Functional Partners:
VF_1006
Hypothetical protein.
     
 0.823
VF_2656
Primosomal replication protein N; Possible pseudogene.
  
   
 0.815
yfcA
Conserved inner membrane protein.
       0.797
yciU
Predicted protein; Belongs to the UPF0263 family.
  
     0.772
VF_1801
Hypothetical protein.
  
     0.763
VF_0315
Opacity associated protein OapA.
  
     0.757
yicH
Conserved protein.
  
     0.756
tfoX1
DNA transformation protein TfoX1 (Sxy); Required for DNA transformation jointly with TfoX2.
  
     0.753
uspB
Universal stress (ethanol tolerance) protein B.
  
     0.752
cpxP
Periplasmic protein CpxP, modulator of CpxAR signaling.
  
     0.750
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.