STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_1063Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (298 aa)    
Predicted Functional Partners:
abgR
Predicted DNA-binding transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.761
VF_2051
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.756
VF_1095
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.720
yeiE
Predicted DNA-binding transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.718
VF_A0597
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.718
VF_1321
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.717
ycjZ
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.709
VF_1974
Hydrogen peroxide-inducible genes activator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.695
VF_A0387
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.690
yafC
Predicted DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.677
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.