Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VF_1111Transcriptional regulator, LysR family. (245 aa)    
Predicted Functional Partners:
VF_A0744
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.764
VF_A1048
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.764
ycjZ
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.752
VF_A0791
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.744
VF_A0911
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.728
VF_A1066
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.699
VF_1110
Hypothetical protein.
       0.533
VF_1333
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.500
gcvA
DNA-binding transcriptional dual regulator, glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.456
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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