STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutZHutZ protein. (175 aa)    
Predicted Functional Partners:
huvX
HuvX protein.
 
  
 0.972
hutW
Coproporphyrinogen oxidase, anaerobic.
 
   
 0.913
VF_A0332
TonB system receptor, putative.
 
  
 0.880
hutA
Heme transport protein HutA.
 
  
 0.877
hmuV
Hemin import ATP-binding protein HmuV; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
   
 0.873
hmuT
Hemin-binding periplasmic protein HmuT precursor.
 
  
 0.867
VF_1901
Hypothetical protein.
  
   
 0.757
exbD1
TonB system transport protein ExbD1.
 
  
 0.734
tonB1
TonB1 protein.
 
  
 0.711
VF_1900
COME operon protein 3.
      
 0.692
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.