STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccoSCytochrome oxidase maturation protein, cbb3-type. (58 aa)    
Predicted Functional Partners:
VF_1307
Integral membrane protein.
 
     0.908
ccoP
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.904
VF_1303
Conserved membrane protein.
 
     0.898
VF_1304
Copper-exporting ATPase.
 
  
 0.898
ccoO
Cytochrome c oxidase, cbb3-type, subunit II.
 
  
 0.845
ccoN
Cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.809
ccoQ
Cbb3-type cytochrome oxidase component FixQ family.
 
  
 0.774
VF_2551
Hypothetical protein.
 
  
 0.693
fnr
Transcriptional regulatory protein Fnr, global regulator of anaerobic growth.
  
    0.595
VF_0308
Conserved hypothetical protein.
  
     0.546
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.