STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdnIFormate dehydrogenase N, gamma subunit. (340 aa)    
Predicted Functional Partners:
fdnH
Formate dehydrogenase N, beta subunit.
 
 0.998
fdnG
Formate dehydrogenase N, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.998
fdhF
Formate dehydrogenase-H; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.982
VF_1362
Cytoplasmic chaperone TorD family.
 
  
 0.922
VF_1363
Formate hydrogenlyase subunit 6.
 
   
 0.904
yeiG
Predicted esterase; Serine hydrolase involved in the detoxification of formaldehyde.
     
  0.900
purU
Formyltetrahydrofolate hydrolase.
     
  0.900
fdhD
FdhD protein (FdsC); Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
  
 0.879
napA
Nitrate reductase, large, cytochrome C550 subunit, periplasmic; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
  
 0.858
VF_1364
Hypothetical protein.
 
     0.851
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.