Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VF_1371 | VF_1372 | VF_1371 | VF_1372 | Permease. | Permease. | 0.982 |
VF_1371 | VF_1373 | VF_1371 | VF_1373 | Permease. | Transporter. | 0.443 |
VF_1371 | pcp | VF_1371 | VF_1370 | Permease. | Pyrrolidone-carboxylate peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family. | 0.951 |
VF_1371 | ybgJ | VF_1371 | VF_1375 | Permease. | Predicted enzyme subunit. | 0.507 |
VF_1371 | ybgK | VF_1371 | VF_1374 | Permease. | Predicted enzyme subunit. | 0.436 |
VF_1371 | ybgL | VF_1371 | VF_1376 | Permease. | Predicted lactam utilization protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | 0.748 |
VF_1372 | VF_1371 | VF_1372 | VF_1371 | Permease. | Permease. | 0.982 |
VF_1372 | VF_1373 | VF_1372 | VF_1373 | Permease. | Transporter. | 0.443 |
VF_1372 | pcp | VF_1372 | VF_1370 | Permease. | Pyrrolidone-carboxylate peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family. | 0.950 |
VF_1372 | ybgJ | VF_1372 | VF_1375 | Permease. | Predicted enzyme subunit. | 0.440 |
VF_1372 | ybgK | VF_1372 | VF_1374 | Permease. | Predicted enzyme subunit. | 0.454 |
VF_1372 | ybgL | VF_1372 | VF_1376 | Permease. | Predicted lactam utilization protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | 0.753 |
VF_1373 | VF_1371 | VF_1373 | VF_1371 | Transporter. | Permease. | 0.443 |
VF_1373 | VF_1372 | VF_1373 | VF_1372 | Transporter. | Permease. | 0.443 |
VF_1373 | VF_1377 | VF_1373 | VF_1377 | Transporter. | Hypothetical protein; Belongs to the D-glutamate cyclase family. | 0.900 |
VF_1373 | pcp | VF_1373 | VF_1370 | Transporter. | Pyrrolidone-carboxylate peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family. | 0.444 |
VF_1373 | ybgJ | VF_1373 | VF_1375 | Transporter. | Predicted enzyme subunit. | 0.919 |
VF_1373 | ybgK | VF_1373 | VF_1374 | Transporter. | Predicted enzyme subunit. | 0.916 |
VF_1373 | ybgL | VF_1373 | VF_1376 | Transporter. | Predicted lactam utilization protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | 0.922 |
VF_1377 | VF_1373 | VF_1377 | VF_1373 | Hypothetical protein; Belongs to the D-glutamate cyclase family. | Transporter. | 0.900 |
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