Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VF_1379 | VF_1380 | VF_1379 | VF_1380 | Hypothetical protein. | Penicillin-binding protein. | 0.773 |
VF_1379 | VF_1381 | VF_1379 | VF_1381 | Hypothetical protein. | Hypothetical protein. | 0.485 |
VF_1380 | VF_1379 | VF_1380 | VF_1379 | Penicillin-binding protein. | Hypothetical protein. | 0.773 |
VF_1380 | VF_1381 | VF_1380 | VF_1381 | Penicillin-binding protein. | Hypothetical protein. | 0.485 |
VF_1380 | amiB | VF_1380 | VF_2326 | Penicillin-binding protein. | N-acetylmuramoyl-l-alanine amidase II. | 0.452 |
VF_1380 | nagZ | VF_1380 | VF_A0493 | Penicillin-binding protein. | Beta N-acetyl-glucosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | 0.481 |
VF_1381 | VF_1379 | VF_1381 | VF_1379 | Hypothetical protein. | Hypothetical protein. | 0.485 |
VF_1381 | VF_1380 | VF_1381 | VF_1380 | Hypothetical protein. | Penicillin-binding protein. | 0.485 |
amiB | VF_1380 | VF_2326 | VF_1380 | N-acetylmuramoyl-l-alanine amidase II. | Penicillin-binding protein. | 0.452 |
amiB | nagZ | VF_2326 | VF_A0493 | N-acetylmuramoyl-l-alanine amidase II. | Beta N-acetyl-glucosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | 0.770 |
nagZ | VF_1380 | VF_A0493 | VF_1380 | Beta N-acetyl-glucosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | Penicillin-binding protein. | 0.481 |
nagZ | amiB | VF_A0493 | VF_2326 | Beta N-acetyl-glucosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | N-acetylmuramoyl-l-alanine amidase II. | 0.770 |