STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_1401Sigma-54 dependent response regulator. (475 aa)    
Predicted Functional Partners:
VF_1400
Sensor histidine kinase.
 
 
 0.903
rpoN
RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.885
rscS
Hybrid sensor kinase RscS; Activator of syp locus genes.
  
 
 0.766
arcB
Hybrid sensory histidine kinase in two-component regulatory system with ArcA.
  
 
 0.699
ntrB
Nitrogen regulatory sensory histidine kinase in two-component regulatory system with NtrC.
 
 0.644
sypM
Acetyltransferase (isoleucine patch superfamily); Syp polysaccharide locus.
      
 0.639
sypI
Glycosyl transferases group 1; Syp polysaccharide locus.
   
 
 0.612
flhG
Flagellar synthesis regulator FlhG, conserved domain COG0455.
  
 
 0.589
VF_A0795
Two component response regulator.
 
 
 0.578
sypF
Two-component hybrid sensor histidine kinase; Syp polysaccharide locus.
  
 
 0.577
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.