STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_1407Preprotein translocase subunit-like protein. (110 aa)    
Predicted Functional Partners:
VF_A0615
Hypothetical protein.
 
     0.669
VF_1166
Endonuclease/exonuclease/phosphatase family superfamily.
 
     0.634
VF_0297
Acriflavin resistance periplasmic protein.
  
     0.618
VF_1901
Hypothetical protein.
  
     0.576
VF_A0336
Hypothetical membrane spanning protein.
  
     0.535
VF_A1097
Hypothetical protein.
  
     0.519
VF_1185
Hypothetical protein.
  
     0.492
VF_A0559
Hypothetical protein.
  
     0.491
modC2
Molybdate ABC transporter, ATP-binding component ModC.
       0.486
mobA
Molybdopterin-guanine dinucleotide synthase; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.
       0.486
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.